A group of scientists send three young, genetically modified Pokemon to Team Rocket, but when Team Rocket is about to get them, the Pokemon are mistakenly sent to a home in Pallet Town. Once there, they adjust to peaceful life with the neighborhood kids. But when they go off on a trip to the museum, there's a robbery going on, and Daisy Oak is kidnapped! Now it's up to Karl, Hadley, and Kevin to find the criminals and rescue Kevin's sister.

Act 1: Introduction

Chapter 1: In the Lab
Chapter 2: Package Switcheroo
Chapter 3: Meet the Caliduct Family
Chapter 4: Trip to the Museum... and a Hold-Up?!
Chapter 5: The Quest Begins

Act 2: Road to Disaster

Chapter 6: Earthquake!
Chapter 7: Autumn in Summer
Chapter 8: The Grass Is Not Much Greener
Chapter 9: Dial R For Rocket
Chapter 10: Silph Wars

Act 3: Team Rocket's Secret Plan

Chapter 11: Attack On The S.S. Anne
Chapter 12: Juiced Up At The Power Plant
Chapter 13: It's Snowtime at the Safari Zone
Chapter 14: The Big Freeze at Seafoam Islands... Or Is It?
Chapter 15: Kanto's Peak

Act 4: The Showdown

Chapter 16: Welcome to PokeWorld!
Chapter 17: Return to the Lab
Chapter 18: Birth of Ultima
Chapter 19: Endgame
Chapter 20: Journey's End